Atlassian Integration with AuthPoint

Deployment Overview

This document describes how to set up multi-factor authentication (MFA) for Atlassian® cloud applications with AuthPoint as an identity provider. The steps in this document are for Jira, but can also be used for Confluence and Stride.

This integration guide is specific to Atlassian cloud applications. The steps to integrate on-premise applications are not covered in this integration guide.

Jira (or your other Atlassian application) must already be configured and deployed before you set up MFA with AuthPoint.

Jira can be configured to support MFA in several modes. For this integration, we set up SAML with AuthPoint.

Authentication Data Flow with AuthPoint

AuthPoint communicates with various cloud-based services and service providers with the SAML protocol. This diagram shows the data flow of an MFA transaction for Jira.

Diagram that shows the data flow of an MFA transaction.

Before You Begin

Before you begin these procedures, make sure that:

Configure Jira

To start, you must download the metadata file from the Certificate Management page in the AuthPoint management UI. After you have that, you can configure Jira.

  1. Log in to WatchGuard Cloud.
  2. From the navigation menu, select Configure > AuthPoint. If you have a Service Provider account, you must select an account from Account Manager.
  3. Select Resources.
    The Resources page appears.
  4. Click Certificate.


  1. Next to AuthPoint certificate you will associate with your resource, click and select Download Metadata. We recommend that you choose the certificate with the latest expiration date.

    The AuthPoint metadata provides your resource, in this case Atlassian, with information necessary to identify AuthPoint as a trusted identity provider.

  1. Go to the Atlassian log in page ( and log in as an administrator. Switch to the Jira admin console.


  1. Click and select Site administration.

Site administration

  1. From the Administration navigation menu, click Jira admin icon.


  1. Select your Organization


  1. Select Security.


  1. Select SAML single sign-on.
    The Jira SAML single sign-on page appears.
  2. Open the AuthPoint metadata file you downloaded and find the entityID, SingleSignOnService Location, and X509Certificate values.
  3. In the Identity provider Entity ID text box, type the entityID value from the AuthPoint metadata file.
  4. In the Identity provider SSO URL text box, type the SingleSignOnService Location value from the AuthPoint metadata file.
  5. In Public x509 certificate text box, type the X509Certificate value from the AuthPoint metadata file.

SAML single sign-on

  1. Click Save configuration.

You need the SP Entity ID and SP Assertion Consumer Service URL when you add a SAML resource for Jira in the next section. Copy these values or leave your browser tab open.

Configure AuthPoint

Before AuthPoint can receive authentication requests from Jira, you must specify Jira as a SAML resource in AuthPoint. You must also assign an access policy for the Jira resource to the user group(s) that must authenticate to log in.

Add a Jira Resource in AuthPoint

From the AuthPoint management UI:

  1. From the navigation menu, select Resources.
  2. From the Choose a Resource Type drop-down list, select SAML. Click Add Resource.

  1. On the SAML page, in the Name text box, type a name for this resource.
  2. From the Application Type drop-down list, select Jira.
  3. In the Service Provider Entity ID text box, type or paste the SP Entity ID from the Jira SAML single sign-on page.
  4. In the Assertion Consumer Service text box, type or paste the SP Assertion Consumer Service URL from the Jira SAML single sign-on page.
  5. From the AuthPoint Certificate drop-down list, select the AuthPoint certificate to associate with your resource. This must be the same certificate that you downloaded the metadata for in the previous section.
  6. Click Save.

Add an Access Policy to AuthPoint

You must have at least one user group in AuthPoint for authentication with Jira, and you must assign an access policy for the Jira resource to that group. If you already have a group, you do not have to add another group.

In the AuthPoint management UI:

  1. From the navigation menu, select Groups.
  2. To add a new group, click Add Group. If you already have a group that you want to use, select the group to edit it.

  1. In the Name text box, type a descriptive name for the group.
  2. (Optional) In the Description text box, type a description of the group.

  1. In the Access Policy section, click Add Policy.

  1. In the Add Policy dialog box, from the Resource drop-down list, select the resource you want to add an access policy for.
  2. (Optional) To require that users type their password before they authenticate for this resource, enable the Require Password Authentication toggle.
  3. Select the authentication options that users in this group can select from when they authenticate.

    For SAML resources, if you select more than one authentication option, users must select one of the available options when they authenticate. For example, if you select OTP and Push, users can choose to type their OTP or approve a push to authenticate. You cannot require that they do both.

  1. Click Add.

  1. (Optional) Add one or more safe locations to your group. For more information about safe locations and detailed instructions to add them, see About Safe Locations.
  2. Click Save.

Add Users to AuthPoint

Before you assign users to a group, you must add the users to AuthPoint. There are two ways to add AuthPoint user accounts:

  • Sync users from an external user database
  • Add local AuthPoint users

Each user must be a member of a group. You must add at least one group before you can add users to AuthPoint.

Test the Integration

To test AuthPoint MFA with Jira, you can authenticate with a mobile token on your mobile device. For SAML resources, you can choose any method (push, QR code, or one-time password).

In this example, we show the push authentication method (users receive a push notification in the mobile app that they must approve to authenticate).

  1. In a web browser, go to the Atlassian log in page (
  2. On the Atlassian log in page, type your email address. Click Continue.
    The AuthPoint authentication page appears.

    This email address must be associated with both your AuthPoint and Jira user accounts. The email address must belong to your Atlassian verified domain.

  3. On the AuthPoint authentication page, type your email address. Click Next.

    This is the same email address used in the previous step.

  4. If required, in the Password text box, type your password.
  5. Click Send Push.
  6. Approve the authentication request that is sent to your mobile device.
    You are logged in to Atlassian console and can switch to Jira.